Using offsets in the console is a useful process when you have based your offline programming in Capture and then when you end up in the venue with the real fixtures they need an offset in order to match what you were seeing in Capture. Now, after you have applied an offset and you connect Capture on the side it will not be using these offsets and this is expected.
The source of the problem is that the Capture libraries had the pan/tilt information wrong in the first place. If it was right you would never need to apply an offset. So the right thing to do is follow the Pan & Tilt Calibration Guide and send the results to library@
You can do this for any fixture you have come across that required offsets, and you will be receiving the library update in a day or two.